nf-core/bacphlip @ 0.0.0-0c7146d
Summary
A bacteriophage lifestyle prediction tool
Get started
Add the following snippet to your workflow script to include this module.
include { BACPHLIP } from 'nf-core/bacphlip'
License
MIT License
Process
Name
|
BACPHLIP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
FASTA file containing phage contigs/scaffolds/chromosomes (if it is a multi-FASTA file be sure to add the *.{fasta,fna,fa}
|
Output
3 channels
#1
bacphlip_results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bacphlip
file
|
TSV file containing Temperate and Virulent scores for each phage sequence *.bacphlip
|
#2
hmmsearch_results
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.hmmsearch.tsv
file
|
TSV file containing binary output indicating gene presence/absence based on hmmsearch results *.hmmsearch.tsv
|
#3
versions_bacphlip
tuple
${task.process}
string
|
The name of the process |
|---|---|
bacphlip
string
|
The name of the tool |
0.9.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| bacphlip | A Random Forest classifier to predict bacteriophage lifestyle | https://github.com/adamhockenberry/bacphlip |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:29 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fbacphlip/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/bacphlip/blobs/sha256:33fcbec8d14f73c4e7cb4dc292f43fe6d577cfe0eea3986707d53c0c82a06525 |
| Size | 2.4 KB |
| Checksum | sha256:33fcbec8d14f73c4e7cb4dc292f43fe6d577cfe0eea3986707d53c0c82a06525 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:29 (UTC) | 1 | 2.4 KB | - |