nf-core/autocycler/trim @ 0.0.0-0c7146d
Summary
Trim cluster assembly graphs to remove unsupported segments prior to resolution.
Get started
Add the following snippet to your workflow script to include this module.
include { AUTOCYCLER_TRIM } from 'nf-core/autocycler/trim'
License
MIT License
Process
Name
|
AUTOCYCLER_TRIM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
gfa
file
|
Cluster-specific assembly graph in GFA format. *.gfa
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
trim/$prefix/*.gfa
file
|
Trimmed assembly graphs emitted by Autocycler. trim/*/*.gfa
|
#2
stats
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
trim/$prefix/*.yaml
file
|
Trimming statistics for each cluster. trim/*/*.yaml
|
#3
versions_autocycler
tuple
${task.process}
string
|
The name of the process |
|---|---|
autocycler
string
|
The name of the tool |
autocycler --version | sed 's/^[^ ]* //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| autocycler | A tools for generating consensus long-read assemblies for bacterial genomes. | https://github.com/rrwick/Autocycler/wiki |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:25 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Ftrim/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/autocycler/trim/blobs/sha256:1dc03aa1b232c00eb0a839a9e89370eb3cf67373a0a6c1baccebd96d53e42c94 |
| Size | 3.0 KB |
| Checksum | sha256:1dc03aa1b232c00eb0a839a9e89370eb3cf67373a0a6c1baccebd96d53e42c94 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:25 (UTC) | 1 | 3.0 KB | - |