Nextflow Registry | nf-core/autocycler/compress@0.0.0-0c7146d

nf-core/autocycler/compress @ 0.0.0-0c7146d

Package candidate assemblies for clustering by Autocycler.

autocycler genome-assembly compression long-read

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @dwells-eit @eit-maxlcummins

Maintainers: @dwells-eit

Package candidate assemblies for clustering by Autocycler.

Add the following snippet to your workflow script to include this module.

include { AUTOCYCLER_COMPRESS } from 'nf-core/autocycler/compress'

MIT License

Process

`Name`	`AUTOCYCLER_COMPRESS`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`assemblies` file	Candidate assembly files (typically FASTA) generated for the sample. `*.{fasta,fa,fasta.gz,fa.gz}`

Output 3 channels

#1 gfa tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`compress/${prefix}/*.gfa` file	Assembly graph files ready for clustering. `compress//.gfa`

#2 stats tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`compress/${prefix}/*.yaml` file	Summary statistics generated during compression. `compress//.yaml`

#3 versions_autocycler tuple

`${task.process}` string	The name of the process
`autocycler` string	The name of the tool
`autocycler --version \| sed 's/^[^ ]* //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
autocycler	A tools for generating consensus long-read assemblies for bacterial genomes.	https://github.com/rrwick/Autocycler/wiki

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:23:20 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fautocycler%2Fcompress/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/autocycler/compress/blobs/sha256:ab73c3fac848fa37b4bb0cc2b8efe9810e1e114781f72177adb3e89237babe26
Size	2.4 KB
Checksum	sha256:ab73c3fac848fa37b4bb0cc2b8efe9810e1e114781f72177adb3e89237babe26
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:23:20 (UTC)		1	2.4 KB	-