nf-core/authentict/deam2cont @ 0.0.0-0c7146d
Summary
Use deamination patterns to estimate contamination in single-stranded libraries
Get started
Add the following snippet to your workflow script to include this module.
include { AUTHENTICT_DEAM2CONT } from 'nf-core/authentict/deam2cont'
License
MIT License
Name
|
AUTHENTICT_DEAM2CONT |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file (Mandatory) *.{bam,cram,sam}
|
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
config
file
|
Optional AuthentiCT configuration text file *
|
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
positions
file
|
Optional text file with positions that sequences should overlap *
|
txt
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.txt
file
|
Maximum likelihood estimates with associated standard errors *.txt
|
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools --version 2>&1 | head -n1 | sed 's/^.*samtools //'
eval
|
The expression to obtain the version of the tool |
versions_authentict
tuple
${task.process}
string
|
The name of the process |
|---|---|
authentict
string
|
The name of the tool |
echo \$(AuthentiCT --version 2>&1)
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| authentict | Estimates present-day DNA contamination in ancient DNA single-stranded libraries. | https://github.com/StephanePeyregne/AuthentiCT |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:23:14 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fauthentict%2Fdeam2cont/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/authentict/deam2cont/blobs/sha256:05f2effb5b01d7c19b6a30c4992ab6c762439605f8f0cab596b8ba909da60eb6 |
| Size | 2.7 KB |
| Checksum | sha256:05f2effb5b01d7c19b6a30c4992ab6c762439605f8f0cab596b8ba909da60eb6 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:23:14 (UTC) | 1 | 2.7 KB | - |