Nextflow Registry | nf-core/atlasgeneannotationmanipulation/gtf2featureannotation@0.0.0-0c7146d

nf-core/atlasgeneannotationmanipulation/gtf2featureannotation @ 0.0.0-0c7146d

Generate tables of feature metadata from GTF files

gtf gene annotation

Latest version: 0.0.0-e3e0c68

Total downloads: 2

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Generate tables of feature metadata from GTF files

Add the following snippet to your workflow script to include this module.

include { ATLASGENEANNOTATIONMANIPULATION_GTF2FEATUREANNOTATION } from 'nf-core/atlasgeneannotationmanipulation/gtf2featureannotation'

MIT License

Process

`Name`	`ATLASGENEANNOTATIONMANIPULATION_GTF2FEATUREANNOTATION`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing information on input GTF file e.g. [ id:'test' ]
`gtf` file	gtf annotation file `*.{gtf}`

#2 tuple

`meta2` map	Groovy Map containing information in input FASTA file e.g. [ id:'test' ]
`fasta` file	An optional cDNA file for extracting meta info and/or filtering. `*.{gtf}`

Output 3 channels

#1 filtered_cdna tuple

`meta` map	Groovy Map containing sample information
`*.fa.gz` file	Where --parse-cdnas is specified in ext.args and an input fasta file is provided, filtered sequences are output to the specified file. No file will be output if this is not specified (for example for use of --dummy-from-cdnas only). See documentation at https://github.com/ebi-gene-expression-group/atlas-gene-annotation-manipulation. `*.{tsv}`

#2 feature_annotation tuple

`meta` map	Groovy Map containing sample information
`*.anno.tsv` file	TSV file with feature annotation `*.{tsv}`

#3 versions_atlasgeneannotationmanipulation tuple

`${task.process}` string	The name of the process
`atlas-gene-annotation-manipulation` string	The name of the tool
`1.1.1` string	The expression to obtain the version of the tool

Tool	Description	Homepage
atlasgeneannotationmanipulation	Scripts for manipulating gene annotation	https://github.com/ebi-gene-expression-group/atlas-gene-annotation-manipulation

Version	0.0.0-0c7146d
Commit ID	e3e0c687eb5c129c011fca992af762ff2d4cb0f3
Release Date	08 Apr 2026 18:23:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fatlasgeneannotationmanipulation%2Fgtf2featureannotation/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/atlasgeneannotationmanipulation/gtf2featureannotation/blobs/sha256:4e45051975b623e917525b6158ae5d85486f9aed58a9d3d5bfefca0b04ccef91
Size	2.8 KB
Checksum	sha256:4e45051975b623e917525b6158ae5d85486f9aed58a9d3d5bfefca0b04ccef91
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-e3e0c68	27 Apr 2026 21:15:22 (UTC)		1	2.8 KB	↔
0.0.0-0c7146d	08 Apr 2026 18:23:12 (UTC)		1	2.8 KB	-