nf-core/assemblyscan @ 0.0.0-0c7146d
Summary
Assembly summary statistics in JSON format
Get started
Add the following snippet to your workflow script to include this module.
include { ASSEMBLYSCAN } from 'nf-core/assemblyscan'
License
MIT License
Process
Name
|
ASSEMBLYSCAN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
assembly
file
|
FASTA file for a given assembly *.fasta
|
Output
2 channels
#1
report
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.{json,tsv}
file
|
Assembly statistics in tsv or JSON format *.{json,tsv}
|
#2
versions_assemblyscan
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
assemblyscan
string
|
The tool name |
assembly-scan --version 2>&1 | sed 's/^.*assembly-scan //; s/Using.*\$//'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| assemblyscan | Assembly summary statistics in JSON format | https://github.com/rpetit3/assembly-scan |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:58 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fassemblyscan/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/assemblyscan/blobs/sha256:bbd9abbfaea190957a36c9e98cf2bb1544df23c7aecd7120a3c71d51aa9f20ec |
| Size | 2.4 KB |
| Checksum | sha256:bbd9abbfaea190957a36c9e98cf2bb1544df23c7aecd7120a3c71d51aa9f20ec |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:58 (UTC) | 1 | 2.4 KB | - |