Nextflow Registry | nf-core/arriba/visualisation@0.0.0-0c7146d

nf-core/arriba/visualisation @ 0.0.0-0c7146d

Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.

visualisation arriba fusion RNA-Seq

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rannick

Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.

Add the following snippet to your workflow script to include this module.

include { ARRIBA_VISUALISATION } from 'nf-core/arriba/visualisation'

MIT License

Process

`Name`	`ARRIBA_VISUALISATION`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam` file	BAM/CRAM/SAM file `*.{bam,cram,sam}`
`bai` file	BAM index file `*.bai`
`fusions` file	Arriba fusions file `*.tsv`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`gtf` file	Annotation GTF file `*.gtf`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`protein_domains` file	Protein domain annotation files `*.gff3`

#4 tuple

`meta4` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`cytobands` file	Coordinates of the Giemsa staining bands needed to draw ideograms `.tsv`

Output 2 channels

#1 pdf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.pdf` file	File contains fusions visualisation `*.pdf`

#2 versions_arriba tuple

`${task.process}` string	The name of the process
`arriba` string	The name of the tool
`arriba -h \| grep "Version:" 2>&1 \| sed "s/Version:\s//"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
arriba	Fast and accurate gene fusion detection from RNA-Seq data	https://github.com/suhrig/arriba

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:22:44 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Farriba%2Fvisualisation/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/arriba/visualisation/blobs/sha256:5c8d142ce9aa1b1eb509a68d62e4e6f97f7c4ca4a04b91c435d7ef412d59b60f
Size	3.6 KB
Checksum	sha256:5c8d142ce9aa1b1eb509a68d62e4e6f97f7c4ca4a04b91c435d7ef412d59b60f
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:22:44 (UTC)		1	3.6 KB	-