nf-core/arriba/download @ 0.0.0-0c7146d
Summary
Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
Get started
Add the following snippet to your workflow script to include this module.
include { ARRIBA_DOWNLOAD } from 'nf-core/arriba/download'
License
MIT License
Process
Name
|
ARRIBA_DOWNLOAD |
|---|
Input
1 channel
genome
string
|
hg38, hg19, GRCh38, GRCh37 for humans are accepted |
|---|
Output
5 channels
#1
blacklist
blacklist*${genome}*.tsv.gz
string
|
The blacklist removes recurrent alignment artifacts and transcripts which are present in healthy tissue .tsv.gz
|
|---|
#2
cytobands
cytobands*${genome}*.tsv
file
|
Coordinates of the Giemsa staining bands. This information is used to draw ideograms .tsv
|
|---|
#3
known_fusions
known_fusions*${genome}*.tsv.gz
file
|
Arriba is more sensitive to those fusions to improve the detection rate of expected or highly relevant events, such as recurrent fusions *.tsv.gz
|
|---|
#4
protein_domains
protein_domains*${genome}*.gff3
file
|
Protein domain annotations *.gff3
|
|---|
#5
versions_arriba
tuple
${task.process}
string
|
The name of the process |
|---|---|
arriba
string
|
The name of the tool |
arriba -h | grep "Version:" 2>&1 | sed "s/Version:\s//"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| arriba | Fast and accurate gene fusion detection from RNA-Seq data | https://github.com/suhrig/arriba |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:42 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Farriba%2Fdownload/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/arriba/download/blobs/sha256:4824b44b3b15befdab754ca0c1d0ad2a97650a99fd37187dec0d940d2c65b8e1 |
| Size | 2.6 KB |
| Checksum | sha256:4824b44b3b15befdab754ca0c1d0ad2a97650a99fd37187dec0d940d2c65b8e1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:42 (UTC) | 1 | 2.6 KB | - |