nf-core/ariba/getref @ 0.0.0-0c7146d
Summary
Download and prepare database for Ariba analysis
Get started
Add the following snippet to your workflow script to include this module.
include { ARIBA_GETREF } from 'nf-core/ariba/getref'
License
MIT License
Process
Name
|
ARIBA_GETREF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
db_name
string
|
A database to setup up for Ariba |
Output
2 channels
#1
db
tuple
meta
file
|
An Ariba prepared database *.tar.gz
|
|---|---|
${db_name}.tar.gz
file
|
An Ariba prepared database *.tar.gz
|
#2
versions_ariba
tuple
${task.process}
string
|
The name of the process |
|---|---|
ariba
string
|
The name of the tool |
ariba version | sed -nE "s/ARIBA version: //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ariba | ARIBA: Antibiotic Resistance Identification By Assembly | https://sanger-pathogens.github.io/ariba/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:38 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fariba%2Fgetref/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ariba/getref/blobs/sha256:3931f486b04c2c472b22387142e54a42ecfcad818550a3e73914f38c6c3154e4 |
| Size | 2.0 KB |
| Checksum | sha256:3931f486b04c2c472b22387142e54a42ecfcad818550a3e73914f38c6c3154e4 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:38 (UTC) | 1 | 2.0 KB | - |