nf-core/argnorm @ 0.0.0-0c7146d
Summary
Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD).
Get started
Add the following snippet to your workflow script to include this module.
include { ARGNORM } from 'nf-core/argnorm'
License
MIT License
Process
Name
|
ARGNORM |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
input_tsv
file
|
ARG annotation output *.tsv
|
tool
string
|
ARG annotation tool used argsoap|abricate|deeparg|resfinder|amrfinderplus
|
|---|
db
string
|
Database used for ARG annotation sarg|ncbi|resfinder|deeparg|megares|argannot|resfinderfg
|
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
Normalized argNorm output *.tsv
|
#2
versions_argnorm
tuple
${task.process}
string
|
The name of the process |
|---|---|
argnorm
string
|
The name of the tool |
argnorm --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| argnorm | Normalize antibiotic resistance genes (ARGs) using the ARO ontology (developed by CARD). | https://argnorm.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:34 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fargnorm/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/argnorm/blobs/sha256:7872cf3791320f53cea03b4e459527f9c82d9cafefcf2b25b1e1392e8e6be183 |
| Size | 2.6 KB |
| Checksum | sha256:7872cf3791320f53cea03b4e459527f9c82d9cafefcf2b25b1e1392e8e6be183 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:34 (UTC) | 1 | 2.6 KB | - |