nf-core/angsd/gl @ 0.0.0-0c7146d
Summary
Calculated genotype likelihoods from BAM files.
Get started
Add the following snippet to your workflow script to include this module.
include { ANGSD_GL } from 'nf-core/angsd/gl'
License
MIT License
Process
Name
|
ANGSD_GL |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
A list of BAM or CRAM files *.{bam,cram}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
A reference genome in FASTA format *.fasta
|
#3
tuple
meta3
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
error_file
file
|
A file containing information about type specific errors. *.error.chunkunordered
|
Output
2 channels
#1
versions_angsd
tuple
${task.process}
string
|
The name of the process |
|---|---|
angsd
string
|
The name of the tool |
angsd 2>&1 | sed '1!d;s/.*version: //;s/ .*//'
eval
|
The expression to obtain the version of the tool |
#2
genotype_likelihood
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{glf,beagle}.gz
file
|
File containing genotype likelihoods per sample *.{glf,beagle}.gz
|
| Tool | Description | Homepage |
|---|---|---|
| angsd | ANGSD: Analysis of next generation Sequencing Data | http://www.popgen.dk/angsd/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:16 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fangsd%2Fgl/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/angsd/gl/blobs/sha256:2ef058b5e10de241a5eea9717edf4d1f113c4fc8c0b6daf927c0369cd75cbb80 |
| Size | 3.5 KB |
| Checksum | sha256:2ef058b5e10de241a5eea9717edf4d1f113c4fc8c0b6daf927c0369cd75cbb80 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:16 (UTC) | 1 | 3.5 KB | - |