nf-core/amulety/esm2 @ 0.0.0-0c7146d
Summary
A module to create esm2 embeddings of antibody (BCR) amino acid sequences using amulety.
Get started
Add the following snippet to your workflow script to include this module.
include { AMULETY_ESM2 } from 'nf-core/amulety/esm2'
License
MIT License
Process
Name
|
AMULETY_ESM2 |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tsv
file
|
TSV with BCR/TCR nucleotide sequences in AIRR rearrangement format *.{tsv}
|
chain
string
|
The chain to use for the embeddings. Can be either 'H' (heavy) or 'HL' (heavy + light, for single-cell data). |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
embedding
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
TSV with esm2 embeddings. *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| amulety | Python package to create embeddings of BCR and TCR amino acid sequences. | https://amulety.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:07 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Famulety%2Fesm2/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/amulety/esm2/blobs/sha256:0e62188bd5717bb00d4379f0acb7aab7ac1c6e238b340323cb86a56ba4f9ace9 |
| Size | 2.4 KB |
| Checksum | sha256:0e62188bd5717bb00d4379f0acb7aab7ac1c6e238b340323cb86a56ba4f9ace9 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:07 (UTC) | 1 | 2.4 KB | - |