nf-core/amulety/balmpaired @ 0.0.0-0c7146d
Summary
A module to create BALM paired embeddings of antibody (BCR) amino acid sequences using amulety.
Get started
Add the following snippet to your workflow script to include this module.
include { AMULETY_BALMPAIRED } from 'nf-core/amulety/balmpaired'
License
MIT License
Process
Name
|
AMULETY_BALMPAIRED |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tsv
file
|
TSV with BCR/TCR nucleotide sequences in AIRR rearrangement format *.{tsv}
|
chain
string
|
The chain to use for the embeddings. Can be either 'H' (heavy) or 'HL' (heavy + light, for single-cell data). |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
embedding
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
TSV with BALM paired embeddings. *.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| amulety | Python package to create embeddings of BCR and TCR amino acid sequences. | https://amulety.readthedocs.io/en/latest/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:22:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Famulety%2Fbalmpaired/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/amulety/balmpaired/blobs/sha256:42307b24af1d84e81bd468500f7978cf321c34aaa1725752aa91a0fb6dafdefa |
| Size | 2.4 KB |
| Checksum | sha256:42307b24af1d84e81bd468500f7978cf321c34aaa1725752aa91a0fb6dafdefa |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:22:04 (UTC) | 1 | 2.4 KB | - |