Nextflow Registry | nf-core/ale@0.0.0-0c7146d

nf-core/ale @ 0.0.0-0c7146d

ALE: assembly likelihood estimator.

reference-independent assembly evaluation

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @rodtheo

Maintainers: @rodtheo

ALE: assembly likelihood estimator.

Add the following snippet to your workflow script to include this module.

include { ALE } from 'nf-core/ale'

MIT License

Process

`Name`	`ALE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`asm` file	Assembly in FASTA format `*.{fasta,fa}`
`bam` file	BAM file containing sorted read mappings `*.{bam}`

Output 2 channels

#1 ale tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*_ALEoutput.txt` file	Output TXT file containing ALE results `*_ALEoutput.{txt}`

#2 versions_ale tuple

`${task.process}` string	The name of the process
`ALE` string	The name of the tool
`20180904` string	The expression to obtain the version of the tool

Tool	Description	Homepage
ale	ALE is a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:21:35 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fale/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ale/blobs/sha256:50c8f0c71e781f98d67834cc30c8f7f2d8ca19176e9deb4b013d627cafb646ee
Size	2.5 KB
Checksum	sha256:50c8f0c71e781f98d67834cc30c8f7f2d8ca19176e9deb4b013d627cafb646ee
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:21:35 (UTC)		1	2.5 KB	-