nf-core/agrvate @ 0.0.0-0c7146d
Summary
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
Get started
Add the following snippet to your workflow script to include this module.
include { AGRVATE } from 'nf-core/agrvate'
License
MIT License
Process
Name
|
AGRVATE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
A Staphylococcus aureus fasta file. *.fasta
|
Output
3 channels
#1
summary
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${fasta.baseName}-results/${fasta.baseName}-summary.tab
file
|
A summary of the agrvate assessment *-summary.tab
|
#2
results_dir
${fasta.baseName}-results
directory
|
Results of the agrvate assessment *-results
|
|---|
#3
versions_agrvate
tuple
${task.process}
string
|
The name of the process |
|---|---|
agrvate
string
|
The name of the tool |
agrvate --version | sed 's/[^0-9.]//g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| agrvate | Rapid identification of Staphylococcus aureus agr locus type and agr operon variants. | https://github.com/VishnuRaghuram94/AgrVATE |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:21:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fagrvate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/agrvate/blobs/sha256:24cc4c873188f924b355045c7bae0ad4e21fa2bfb185fa3c804f631f2221af7f |
| Size | 2.4 KB |
| Checksum | sha256:24cc4c873188f924b355045c7bae0ad4e21fa2bfb185fa3c804f631f2221af7f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:33 (UTC) | 1 | 2.4 KB | - |