nf-core/affy/justrma @ 0.0.0-e3e0c68
Summary
Read CEL files into an ExpressionSet and generate a matrix
Get started
Add the following snippet to your workflow script to include this module.
include { AFFY_JUSTRMA } from 'nf-core/affy/justrma'
License
MIT License
Process
Name
|
AFFY_JUSTRMA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
samplesheet
file
|
CSV or TSV format sample sheet with sample metadata and CEL file names |
celfiles_dir
list
|
Path to a directory containing CEL files *.{CEL,CEL.gz}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
description
file
|
Optional description file in MIAME format |
Output
4 channels
#1
rds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.rds
file
|
Serialised ExpressionSet object *.rds
|
#2
annotation
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.annotation.tsv
file
|
TSV-format annotation table *.annotation.tsv
|
#3
expression
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*matrix.tsv
file
|
TSV-format intensity matrix matrix.tsv
|
#4
versions_affy
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| affy | Methods for Affymetrix Oligonucleotide Arrays | https://www.bioconductor.org/packages/release/bioc/html/affy.html |
| Version | 0.0.0-e3e0c68 |
|---|---|
| Commit ID | e3e0c687eb5c129c011fca992af762ff2d4cb0f3 |
| Release Date | 27 Apr 2026 21:15:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Faffy%2Fjustrma/0.0.0-e3e0c68/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/affy/justrma/blobs/sha256:956b835b94cac29108955cf3c523baba6f66c7ffaa8153c5b312a2c59ff4524e |
| Size | 6.0 KB |
| Checksum | sha256:956b835b94cac29108955cf3c523baba6f66c7ffaa8153c5b312a2c59ff4524e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-e3e0c68 | 27 Apr 2026 21:15:21 (UTC) | 1 | 6.0 KB | ↔ | |
| 0.0.0-0c7146d | 08 Apr 2026 18:21:04 (UTC) | 1 | 5.9 KB | - |