Nextflow Registry | nf-core/admixture@0.0.0-0c7146d

nf-core/admixture @ 0.0.0-0c7146d

ADMIXTURE is a program for estimating ancestry in a model-based manner from large autosomal SNP genotype datasets, where the individuals are unrelated (for example, the individuals in a case-control association study).

ancestry population genetics admixture reference panels gwas

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @atrigila

Maintainers: @atrigila @gallvp

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { ADMIXTURE } from 'nf-core/admixture'

License

MIT License

Process

`Name`	`ADMIXTURE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bed_ped_geno` file	One of PLINK ".bed" file or PLINK ".ped" or EIGENSTRAT ".geno" file. If you provide ".bed" then you need to provide ".bim" and "fam" files. If you provide ".ped" or ".geno" then you need to provide a ".map" file and an empty channel. `*.{bed}`
`bim_map` file	Mandatory accompanying file. One of PLINK ".bim" file or PLINK ".map" file. Provide ".bim" if ".bed" is the input. Provide ".map" if ".ped" or ".geno" is the input. `*.{bim}`
`fam` file	PLINK ".fam" file. Mandatory if you provide ".bed" as input. Replace with an empty channel if input is ".ped" or ".geno". `*.{fam}`

`K` integer	Belief of the number of ancestral populations. `{*}`

Output 3 channels

#1 allele_frequencies tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.P` file	Space-delimited files containing the allele frequencies of the inferred ancestral populations. The output filenames have the number of populations (K) that was assumed for the analysis. `*.{P}`

#2 ancestry_fractions tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.Q` file	Space-delimited files containing ancestry fractions. The output filenames have the number of populations (K) that was assumed for the analysis. `*.{Q}`

#3 versions_admixture tuple

`${task.process}` string	The name of the process
`admixture` string	The name of the tool
`admixture --version \| tail -n 1` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
admixture	ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.	https://dalexander.github.io/admixture/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 18:21:02 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fadmixture/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/admixture/blobs/sha256:6eae9bec3315c6f35ea967ea93026ff73121513abb1953d57adb335facee9107
Size	2.9 KB
Checksum	sha256:6eae9bec3315c6f35ea967ea93026ff73121513abb1953d57adb335facee9107
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 18:21:02 (UTC)		1	2.9 KB	-