nf-core/adapterremovalfixprefix @ 0.0.0-0c7146d
Summary
Fixes prefixes from AdapterRemoval2 output to make sure no clashing read names are in the output. For use with DeDup.
Get started
Add the following snippet to your workflow script to include this module.
include { ADAPTERREMOVALFIXPREFIX } from 'nf-core/adapterremovalfixprefix'
License
MIT License
Process
Name
|
ADAPTERREMOVALFIXPREFIX |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastq
file
|
FASTQ file from AdapterRemoval2 *.{fq.gz,fastq.gz}
|
Output
2 channels
#1
fixed_fastq
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fq.gz
file
|
FASTQ file with fixed read prefixes for DeDup *.{fq.gz}
|
#2
versions_adapterremovalfixprefix
tuple
${task.process}
string
|
The name of the process |
|---|---|
adapterremovalfixprefix
string
|
The name of the tool |
echo 0.0.5
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| adapterremovalfixprefix | Fixes adapter removal prefixes to make sure no clashing read names are in the output. | https://github.com/apeltzer/AdapterRemovalFixPrefix |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 18:21:00 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fadapterremovalfixprefix/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/adapterremovalfixprefix/blobs/sha256:14c599fefbe33f6c49bff0bc17e4ac754c83e01f04d8c6010adb70a7e6a2b9cf |
| Size | 2.5 KB |
| Checksum | sha256:14c599fefbe33f6c49bff0bc17e4ac754c83e01f04d8c6010adb70a7e6a2b9cf |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 18:21:00 (UTC) | 1 | 2.5 KB | - |