Nextflow Modules
Showing module(s) with keyword "subsequence extraction"
| Module | Keywords | Description |
|---|---|---|
| nf-core/hmmer/eslsfetch | hmmer easel sequence retrieval subsequence extraction fasta | Retrieves one or more complete sequences or subsequences from a sequence file using its pre-built SSI index. The esl-sfetch utility is an Easel miniapp bundled with the HMMER package. This module only fetches: the SSI index must be produced beforehand by the sibling module `hmmer/eslsfetchindex`. The keyfile is used to fetch the named sequences (-f), or, with ext.args = '-C', parsed as a subsequence coordinate file (-Cf) to extract and rename subsequences. |