nf-core/windowmasker/ustat @ 0.0.0-0c7146d
Summary
A program to take a counts file and creates a file of genomic co-ordinates to be masked.
Get started
Add the following snippet to your workflow script to include this module.
include { WINDOWMASKER_USTAT } from 'nf-core/windowmasker/ustat'
License
MIT License
Process
Name
|
WINDOWMASKER_USTAT |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
counts
file
|
Contains count data of repetitive regions. |
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
ref
file
|
An input nucleotide fasta file. |
Output
2 channels
#1
intervals
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${output}
file
|
intervals |
#2
versions_windowmasker
tuple
${task.process}
string
|
The name of the process |
|---|---|
windowmasker
string
|
The name of the tool |
windowmasker -version-full | head -n 1 | sed 's/^.*windowmasker. //; s/ .*\$//'
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| windowmasker | A program to mask highly repetitive and low complexity DNA sequences within a genome. | https://github.com/ncbi/ncbi-cxx-toolkit-public |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:23:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fwindowmasker%2Fustat/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/windowmasker/ustat/blobs/sha256:812781c3dd46a92d2d892185e94733058d5210860d1b4f7d7f30f1a1a2ac5a3f |
| Size | 2.5 KB |
| Checksum | sha256:812781c3dd46a92d2d892185e94733058d5210860d1b4f7d7f30f1a1a2ac5a3f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:23:37 (UTC) | 1 | 2.5 KB | - |