nf-core/windowmasker/convert @ 0.0.0-0c7146d
Summary
Masks out highly repetitive DNA sequences with low complexity in a genome
Get started
Add the following snippet to your workflow script to include this module.
include { WINDOWMASKER_CONVERT } from 'nf-core/windowmasker/convert'
License
MIT License
Process
Name
|
WINDOWMASKER_CONVERT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
counts
file
|
valid unit counts file *.{ascii,binary,oascii,obinary,txt}
|
Output
2 channels
#1
converted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${output}
file
|
converted file |
#2
versions_windowmasker
tuple
${task.process}
string
|
The name of the process |
|---|---|
windowmasker
string
|
The name of the tool |
windowmasker -version-full | head -n 1 | sed 's/^.*windowmasker. //; s/ .*\$//'
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| windowmasker | A program to mask highly repetitive and low complexity DNA sequences within a genome. | https://blast.ncbi.nlm.nih.gov/Blast.cgi |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:23:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fwindowmasker%2Fconvert/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/windowmasker/convert/blobs/sha256:a5b0cf82af4db5aa142ceb3c577de1c2445ec736bf1bc384ec9d3b319efe6e8c |
| Size | 2.7 KB |
| Checksum | sha256:a5b0cf82af4db5aa142ceb3c577de1c2445ec736bf1bc384ec9d3b319efe6e8c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:23:33 (UTC) | 1 | 2.7 KB | - |