nf-core/vuegen @ 0.0.0-0c7146d

The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.

reports data-visualization streamlit quarto

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sayalaruano @enryH @albsantosdel

Maintainers: @sayalaruano @enryH @albsantosdel

VueGen Module

Dockerimage

The dockerimage is needed as both quarto and the TinyTeX distribution are installed inside the container to make vuegen work properly. At runtime especially apptainer does not support installing packages on the fly to read-only directories.

#!/bin/bash
set -euo pipefail

ORG="quay.io/nf-core"
VERSION="v0.5.1"

# 1. Build & push the base image (nextflow version)
docker buildx build \
  --platform linux/amd64,linux/arm64 \
  --push \
  -t ${ORG}/vuegen:${VERSION} \
  -f Dockerfile .

Process

`Name`	`VUEGEN`

Input 3 channels

`input_type` string	Specifies whether the input is a configuration file ('config') or a directory ('directory'). `^(config\|directory)$`

`input_path` file	Path to the input directory or configuration file used by VueGen.

`report_type` string	The type of report to generate. Options include 'streamlit', 'html', 'pdf', 'docx', 'odt', 'revealjs', 'pptx', and 'jupyter'. `^(streamlit\|html\|pdf\|docx\|odt\|revealjs\|pptx\|jupyter)$`

Output 2 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 output_folder

`*report` directory	The output directory containing the generated report files. If `report_type` is 'streamlit', a 'streamlit_report' directory is created, containing subfolders for each section with Python scripts corresponding to the web application's pages. For other report types, a 'quarto_report' directory is generated, containing a Quarto Markdown (qmd) file that structures the entire report. `*report`

Tool	Description	Homepage
vuegen	The VueGen nf-core module is designed to automate report generation from outputs produced by other modules, subworkflows, or pipelines. The module integrates the VueGen Python library and customizes it for compatibility with the Nextflow environment. VueGen automates the creation of reports from bioinformatics outputs, supporting formats like PDF, HTML, DOCX, ODT, PPTX, Reveal.js, Jupyter notebooks, and Streamlit web applications.	https://github.com/Multiomics-Analytics-Group/vuegen

Version	0.0.0-0c7146d
Commit ID	4e8e48c04e24c2159a5589a36bae0f038809cd48
Release Date	08 Apr 2026 19:23:18 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvuegen/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vuegen/blobs/sha256:68eb447afd5da57338272b1c933ecc3065d52c770073a10bba7a6b7747614c8a
Size	4.7 KB
Checksum	sha256:68eb447afd5da57338272b1c933ecc3065d52c770073a10bba7a6b7747614c8a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:23:18 (UTC)		1	4.7 KB	-