Nextflow Registry | nf-core/vt/decompose@0.0.0-0c7146d

nf-core/vt/decompose @ 0.0.0-0c7146d

decomposes multiallelic variants into biallelic in a VCF file.

decompose multiallelic small variants snps indels

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

decomposes multiallelic variants into biallelic in a VCF file.

Add the following snippet to your workflow script to include this module.

include { VT_DECOMPOSE } from 'nf-core/vt/decompose'

MIT License

Process

`Name`	`VT_DECOMPOSE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`vcf` file	The VCF file to decompose `*.vcf(.gz)?`
`intervals` file	The intervals of the variants of decompose `*.bed`

Output 2 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf.gz` file	The decomposed VCF file `*.vcf.gz`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
vt	A tool set for short variant discovery in genetic sequence data	https://genome.sph.umich.edu/wiki/Vt

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:23:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvt%2Fdecompose/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vt/decompose/blobs/sha256:0dea96525382ddac0f1d93d2b4d6667f5941561f0c45d6d7f1007ba4fb275430
Size	2.5 KB
Checksum	sha256:0dea96525382ddac0f1d93d2b4d6667f5941561f0c45d6d7f1007ba4fb275430
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:23:12 (UTC)		1	2.5 KB	-