nf-core/viennarna/rnafold @ 0.0.0-0c7146d
Summary
Predict RNA secondary structure using the ViennaRNA RNAfold tools. Calculate minimum free energy secondary structures and partition function of RNAs.
Get started
Add the following snippet to your workflow script to include this module.
include { VIENNARNA_RNAFOLD } from 'nf-core/viennarna/rnafold'
License
MIT License
Process
Name
|
VIENNARNA_RNAFOLD |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fasta
file
|
A fasta file containing RNA or transcript sequences *.{fasta,fa}
|
Output
3 channels
#1
versions
tuple
meta
file
|
The text Output of RNAfold that *.{fold}
|
|---|---|
versions.yml
file
|
File containing software versions versions.yml
|
#2
rnafold_ps
tuple
meta
file
|
The text Output of RNAfold that *.{fold}
|
|---|---|
*.ps
file
|
The text Output of RNAfold that *.ss
|
#3
rnafold_txt
tuple
meta
file
|
The text Output of RNAfold that *.{fold}
|
|---|---|
*.fold
file
|
The text Output of RNAfold that *.{fold}
|
| Tool | Description | Homepage |
|---|---|---|
| viennarna | Calculate minimum free energy secondary structures and partition function of RNAs The program reads RNA sequences, calculates their minimum free energy (mfe) structure and prints the mfe structure in bracket notation and its free energy. If not specified differently using commandline arguments, input is accepted from stdin or read from an input file, and output printed to stdout. If the -p option was given it also computes the partition function (pf) and base pairing probability matrix, and prints the free energy of the thermodynamic ensemble, the frequency of the mfe structure in the ensemble, and the ensemble diversity to stdout. | https://www.tbi.univie.ac.at/RNA/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:41 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fviennarna%2Frnafold/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/viennarna/rnafold/blobs/sha256:d20fb4e2027c6a5ed0c32a5c5cc3a19a08eac238da81328228f6415e0459cfa2 |
| Size | 2.7 KB |
| Checksum | sha256:d20fb4e2027c6a5ed0c32a5c5cc3a19a08eac238da81328228f6415e0459cfa2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:41 (UTC) | 1 | 2.7 KB | - |