Nextflow Registry | nf-core/vg/construct@0.0.0-0c7146d

nf-core/vg/construct @ 0.0.0-0c7146d

Constructs a graph from a reference and variant calls or a multiple sequence alignment file

vg graph construct fasta vcf structural variants

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

Constructs a graph from a reference and variant calls or a multiple sequence alignment file

Add the following snippet to your workflow script to include this module.

include { VG_CONSTRUCT } from 'nf-core/vg/construct'

MIT License

Process

`Name`	`VG_CONSTRUCT`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input` list	Either one or more VCF files containing different contigs or a multiple sequence alignment file `*.{vcf.gz,fa,fasta,fna,clustal}`
`tbis` list	The index files for the VCF files `*.tbi`
`insertions_fasta` file	A FASTA file containing insertion sequences (referred to in the VCF file(s)) `*.{fa,fasta,fna}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	The reference FASTA file (cannot be used in combination with `msa`, but is required when using `vcfs`) `*.{fa,fasta,fna}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta_fai` file	The index of the reference FASTA file `*.fai`

Output 2 channels

#1 graph tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.vg` file	The constructed graph `*.vg`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
vg	Variation graph data structures, interchange formats, alignment, genotyping, and variant calling methods.	https://github.com/vgteam/vg

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:22:32 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvg%2Fconstruct/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vg/construct/blobs/sha256:47d8d7b4ef1e57ce5a68e35c59ae512d2c83a7d7b619912318c66addc0a6099a
Size	2.8 KB
Checksum	sha256:47d8d7b4ef1e57ce5a68e35c59ae512d2c83a7d7b619912318c66addc0a6099a
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:22:32 (UTC)		1	2.8 KB	-