nf-core/vembrane/filter @ 0.0.0-0c7146d
Summary
Filter VCF files with vembrane
Get started
Add the following snippet to your workflow script to include this module.
include { VEMBRANE_FILTER } from 'nf-core/vembrane/filter'
License
MIT License
Process
Name
|
VEMBRANE_FILTER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
vcf
file
|
Path to the VCF/BCF file to be filtered. e.g. 'file.vcf', 'file.vcf.gz', 'file.bcf', 'file.bcf.gz' *.{vcf,bcf,vcf.gz,bcf.gz}
|
expression
string
|
The filter expression can be any valid python expression that evaluates to a value of type bool. e.g. 'ANN["SYMBOL"] == "CDH2"' |
|---|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.{vcf,bcf,bcf.gz}
file
|
Filtered VCF output file *.{vcf,bcf,bcf.gz}
|
#2
versions_vembrane
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
vembrane
string
|
The tool name |
vembrane --version | sed '1!d;s/.* //'
string
|
The command used to generate the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vembrane | Filter VCF/BCF files with Python expressions. | https://github.com/vembrane/vembrane/tree/main |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:22:22 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvembrane%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vembrane/filter/blobs/sha256:fa2b12767c02608482b44e8416b6264202f442adeb80365cad38fa52e1fb9e31 |
| Size | 2.8 KB |
| Checksum | sha256:fa2b12767c02608482b44e8416b6264202f442adeb80365cad38fa52e1fb9e31 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:22:22 (UTC) | 1 | 2.8 KB | - |