nf-core/vcf2zarr/explode @ 0.0.0-0c7146d
Summary
Convert VCF(s) to intermediate columnar format
Get started
Add the following snippet to your workflow script to include this module.
include { VCF2ZARR_EXPLODE } from 'nf-core/vcf2zarr/explode'
License
MIT License
Process
Name
|
VCF2ZARR_EXPLODE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Input VCF file *.{vcf,vcf.gz}
|
Output
2 channels
#1
icf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.icf
directory
|
Output intermediate columnar format (ICF) *.{icf}
|
#2
versions_vcf2zarr
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcf2zarr
string
|
The name of the tool |
vcf2zarr --version |& sed -n "s/.* //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vcf2zarr | Convert bioinformatics data to Zarr | https://sgkit-dev.github.io/bio2zarr/vcf2zarr/overview.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:21:58 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvcf2zarr%2Fexplode/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vcf2zarr/explode/blobs/sha256:84590556502b0c732449b21a76f5547174755e7ae53cc1fc96ca1a986c2ef3c3 |
| Size | 3.0 KB |
| Checksum | sha256:84590556502b0c732449b21a76f5547174755e7ae53cc1fc96ca1a986c2ef3c3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:21:58 (UTC) | 1 | 3.0 KB | - |