nf-core/vcf2zarr/convert @ 0.0.0-0c7146d
Summary
Convert VCF data to the VCF Zarr specification reliably, in parallel or distributed over a cluster
Get started
Add the following snippet to your workflow script to include this module.
include { VCF2ZARR_CONVERT } from 'nf-core/vcf2zarr/convert'
License
MIT License
Process
Name
|
VCF2ZARR_CONVERT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
Input VCF file *.{vcf,vcf.gz}
|
Output
2 channels
#1
vcz
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcz
directory
|
Output VCF Zarr store *.{vcz}
|
#2
versions_vcf2zarr
tuple
${task.process}
string
|
The name of the process |
|---|---|
vcf2zarr
string
|
The name of the tool |
vcf2zarr --version |& sed -n "s/.* //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| vcf2zarr | Convert bioinformatics data to Zarr | https://sgkit-dev.github.io/bio2zarr/vcf2zarr/overview.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:21:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvcf2zarr%2Fconvert/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/vcf2zarr/convert/blobs/sha256:81583d87536add46cc58d9e63b936e5d55703525a2f855f0640225356a6359ee |
| Size | 4.4 KB |
| Checksum | sha256:81583d87536add46cc58d9e63b936e5d55703525a2f855f0640225356a6359ee |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:21:56 (UTC) | 1 | 4.4 KB | - |