Nextflow Registry | nf-core/variantbam@0.0.0-0c7146d

nf-core/variantbam @ 0.0.0-0c7146d

Filtering, downsampling and profiling alignments in BAM/CRAM formats

filter bam subsample downsample downsample bam subsample bam

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @bjohnnyd

Maintainers: @bjohnnyd

Filtering, downsampling and profiling alignments in BAM/CRAM formats

Add the following snippet to your workflow script to include this module.

include { VARIANTBAM } from 'nf-core/variantbam'

MIT License

Process

`Name`	`VARIANTBAM`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam` file	BAM/CRAM file `*.{bam,cram}`

Output 2 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.bam` file	Filtered or downsampled BAM file `*.{bam}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
variantbam	Filtering and profiling of next-generational sequencing data using region-specific rules	https://github.com/walaj/VariantBam

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:21:12 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fvariantbam/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/variantbam/blobs/sha256:52a1bc813ff074c5d0a5237643c6b5e4d004540276eb8040198b2129bcb550e1
Size	2.2 KB
Checksum	sha256:52a1bc813ff074c5d0a5237643c6b5e4d004540276eb8040198b2129bcb550e1
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:21:12 (UTC)		1	2.2 KB	-