nf-core/unicycler @ 0.0.0-0c7146d
Summary
Assembles bacterial genomes
Get started
Add the following snippet to your workflow script to include this module.
include { UNICYCLER } from 'nf-core/unicycler'
License
MIT License
Process
Name
|
UNICYCLER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
shortreads
file
|
List of input Illumina FastQ files of size 1 and 2 for single-end and paired-end data, respectively. |
longreads
file
|
List of input FastQ files of size 1, PacBio or Nanopore long reads. |
Output
4 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.assembly.gfa.gz
file
|
gfa file containing assembly *.{assembly.gfa.gz}
|
#2
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
unicycler log file *.{log}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
scaffolds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.scaffolds.fa.gz
file
|
Fasta file containing scaffolds *.{scaffolds.fa.gz}
|
| Tool | Description | Homepage |
|---|---|---|
| unicycler | Hybrid assembly pipeline for bacterial genomes | https://github.com/rrwick/Unicycler |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Funicycler/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/unicycler/blobs/sha256:4af5279de23bc83a36d9d318cf7ec51430478d703f55311fffe03ef6bcac4b0a |
| Size | 2.7 KB |
| Checksum | sha256:4af5279de23bc83a36d9d318cf7ec51430478d703f55311fffe03ef6bcac4b0a |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:51 (UTC) | 1 | 2.7 KB | - |