nf-core/ucsc/liftover @ 0.0.0-0c7146d
Summary
convert between genome builds
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_LIFTOVER } from 'nf-core/ucsc/liftover'
License
MIT License
Process
Name
|
UCSC_LIFTOVER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
Browser Extensible Data (BED) file *.{bed}
|
chain
file
|
Chain file *.{chain,chain.gz}
|
|---|
Output
3 channels
#1
lifted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.lifted.bed
file
|
BED file containing successfully lifted variants *.{lifted.bed}
|
#2
unlifted
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.unlifted.bed
file
|
BED file containing variants that couldn't be lifted *.{unlifted.bed}
|
#3
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Move annotations from one assembly to another | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:31 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fliftover/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ucsc/liftover/blobs/sha256:1722cd0297387455ae5ef57edef08b9ab2be9db3323128517adf7be37a95e5a3 |
| Size | 2.5 KB |
| Checksum | sha256:1722cd0297387455ae5ef57edef08b9ab2be9db3323128517adf7be37a95e5a3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:31 (UTC) | 1 | 2.5 KB | - |