nf-core/ucsc/gtftogenepred @ 0.0.0-0c7146d
Summary
compute average score of bigwig over bed file
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_GTFTOGENEPRED } from 'nf-core/ucsc/gtftogenepred'
License
MIT License
Process
Name
|
UCSC_GTFTOGENEPRED |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gtf
file
|
GTF file *.{gtf}
|
Output
3 channels
#1
refflat
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.refflat
file
|
refflat file *.{refflat}
|
#2
genepred
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.genepred
file
|
genepred file *.{genepred}
|
#3
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Convert GTF files to GenePred format | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:30 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fgtftogenepred/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ucsc/gtftogenepred/blobs/sha256:04baf956c1137008c9c7f4faa84c4d2058424e6dd9f4a6d425586eea0deb0098 |
| Size | 2.5 KB |
| Checksum | sha256:04baf956c1137008c9c7f4faa84c4d2058424e6dd9f4a6d425586eea0deb0098 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:30 (UTC) | 1 | 2.5 KB | - |