nf-core/ucsc/bedtobigbed @ 0.0.0-0c7146d
Summary
Convert file from bed to bigBed format
Get started
Add the following snippet to your workflow script to include this module.
include { UCSC_BEDTOBIGBED } from 'nf-core/ucsc/bedtobigbed'
License
MIT License
Process
Name
|
UCSC_BEDTOBIGBED |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bed
file
|
bed file *.{bed}
|
sizes
file
|
chromosome sizes file *.{sizes}
|
|---|
autosql
file
|
autoSql file to describe the columns of the BED file *.{as}
|
|---|
Output
2 channels
#1
bigbed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bigBed
file
|
bigBed file *.{bigBed}
|
#2
versions_ucsc
tuple
${task.process}
string
|
The name of the process |
|---|---|
ucsc
string
|
The name of the tool |
482
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| ucsc | Convert file from bed to bigBed format | http://hgdownload.cse.ucsc.edu/admin/exe/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:20:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fucsc%2Fbedtobigbed/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/ucsc/bedtobigbed/blobs/sha256:64f22b9f2c4cc0d4ebbafd7d8b84d190b502ea98e339fc989fc645b98e8b6b73 |
| Size | 2.5 KB |
| Checksum | sha256:64f22b9f2c4cc0d4ebbafd7d8b84d190b502ea98e339fc989fc645b98e8b6b73 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:20:26 (UTC) | 1 | 2.5 KB | - |