Nextflow Registry | nf-core/tidk/search@0.0.0-0c7146d

nf-core/tidk/search @ 0.0.0-0c7146d

Searches a genome for a telomere string such as TTAGGG

genomics telomere search

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @GallVp

Maintainers: @GallVp

Searches a genome for a telomere string such as TTAGGG

Add the following snippet to your workflow script to include this module.

include { TIDK_SEARCH } from 'nf-core/tidk/search'

MIT License

Process

`Name`	`TIDK_SEARCH`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	The input fasta file `*.{fsa,fa,fasta}`

`string` string	Search string such as TTAGGG

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.tsv` file	Search results in TSV format `*.tsv`

#2 bedgraph tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.bedgraph` file	Search results in BEDGRAPH format `*.bedgraph`

#3 versions_tidk tuple

`${task.process}` string	The name of the process
`tidk` string	The name of the tool
`tidk --version \| sed 's/tidk //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
tidk	tidk is a toolkit to identify and visualise telomeric repeats in genomes	https://github.com/tolkit/telomeric-identifier

Version	0.0.0-0c7146d
Commit ID	8098ab9d800821e8b18e17fd515ed1e4ebc523f4
Release Date	08 Apr 2026 19:19:37 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftidk%2Fsearch/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tidk/search/blobs/sha256:b6181a7b7290e6287d7b5fb3cf06a6c407ee89daa246a72c6d3cfc77a3b04633
Size	2.6 KB
Checksum	sha256:b6181a7b7290e6287d7b5fb3cf06a6c407ee89daa246a72c6d3cfc77a3b04633
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:19:37 (UTC)		1	2.6 KB	-