Nextflow Registry | nf-core/tiddit/sv@0.0.0-0c7146d

nf-core/tiddit/sv @ 0.0.0-0c7146d

Identify chromosomal rearrangements.

structural variants vcf

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @maxulysse

Maintainers: @maxulysse

Identify chromosomal rearrangements.

Add the following snippet to your workflow script to include this module.

include { TIDDIT_SV } from 'nf-core/tiddit/sv'

MIT License

Process

`Name`	`TIDDIT_SV`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`input` file	BAM/CRAM file `*.{bam,cram}`
`input_index` file	BAM/CRAM index file `*.{bai,crai}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'test_fasta']`
`fasta` file	Input FASTA file `*.{fasta,fa}`
`fai` file	Input FASTA index file `*.{fai}`

#3 tuple

`meta3` map	Groovy Map containing sample information from bwa index e.g. `[ id:'test_bwa-index' ]`
`bwa_index` file	BWA genome index files `Directory containing BWA index *.{amb,ann,bwt,pac,sa}`

Output 3 channels

#1 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.vcf` file	vcf `*.{vcf}`

#2 ploidy tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.ploidies.tab` file	tab `*.{ploidies.tab}`

#3 versions_tiddit tuple

`${task.process}` string	The name of the process
`tiddit` string	The name of the tool
`tiddit \| sed -n 's/^usage: tiddit-//; s/ .*//p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
sv	Search for structural variants.	https://github.com/SciLifeLab/TIDDIT

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:19:32 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftiddit%2Fsv/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tiddit/sv/blobs/sha256:d6499b2b3bbb2bcf6d5f3b4f9e6a99e4798c42d17804a321e6d7141450947a09
Size	3.1 KB
Checksum	sha256:d6499b2b3bbb2bcf6d5f3b4f9e6a99e4798c42d17804a321e6d7141450947a09
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:19:32 (UTC)		1	3.1 KB	-