nf-core/thermorawfileparser @ 0.0.0-0c7146d
Summary
Parses a Thermo RAW file containing mass spectra to an open file format
Get started
Add the following snippet to your workflow script to include this module.
include { THERMORAWFILEPARSER } from 'nf-core/thermorawfileparser'
License
MIT License
Process
Name
|
THERMORAWFILEPARSER |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
raw
file
|
Thermo RAW file *.{raw,RAW}
|
Output
2 channels
#1
spectra
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
file
|
Mass spectra in open format *.{mzML,mzML.gz,mgf,mgf.gz,parquet,parquet.gz}
|
#2
versions_thermorawfileparser
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
thermorawfileparser
string
|
The name of the tool |
ThermoRawFileParser.sh --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| thermorawfileparser | Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono | https://github.com/compomics/ThermoRawFileParser/blob/master/README.md |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:19:26 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fthermorawfileparser/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/thermorawfileparser/blobs/sha256:a8524dc0faf0e4052083683cbdb66690a93fd1c10a3cd054002714d692c5b421 |
| Size | 2.8 KB |
| Checksum | sha256:a8524dc0faf0e4052083683cbdb66690a93fd1c10a3cd054002714d692c5b421 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:19:26 (UTC) | 1 | 2.8 KB | - |