nf-core/telseq @ 0.0.0-0c7146d
Summary
Telseq: a software for calculating telomere length
Get started
Add the following snippet to your workflow script to include this module.
include { TELSEQ } from 'nf-core/telseq'
License
MIT License
Process
Name
|
TELSEQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram,sam}
|
bai
file
|
bam index file *.{bai,crai}
|
bed
file
|
Optional exome regions in BED format. These regions will be excluded *.bed
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'genome' ] |
|---|---|
fasta
file
|
Reference genome file *.{fa,fasta}
|
fai
file
|
Fasta index file *.fai
|
Output
3 channels
#1
output
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.telseq.tsv
file
|
Telseq output *.tsv
|
#2
versions_telseq
tuple
${task.process}
string
|
The name of the process |
|---|---|
telseq
string
|
The name of the tool |
echo 0.0.2
eval
|
The expression to obtain the version of telseq |
#3
versions_samtools
tuple
${task.process}
string
|
The name of the process |
|---|---|
samtools
string
|
The name of the tool |
samtools --version | sed -n '1s/samtools //p'
eval
|
The expression to obtain the version of samtools |
| Tool | Description | Homepage |
|---|---|---|
| telseq | A software for calculating telomere length | https://github.com/zd1/telseq |
| samtools | Tools for dealing with SAM, BAM and CRAM files | http://www.htslib.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:19:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftelseq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/telseq/blobs/sha256:cd70eae37a272f193aadca32764051544a97b84976f60c753e799f542b28ffdd |
| Size | 3.0 KB |
| Checksum | sha256:cd70eae37a272f193aadca32764051544a97b84976f60c753e799f542b28ffdd |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:19:21 (UTC) | 1 | 3.0 KB | - |