nf-core/tcoffee/extractfrompdb @ 0.0.0-0c7146d
Summary
Reformats the header of PDB files with t-coffee
Get started
Add the following snippet to your workflow script to include this module.
include { TCOFFEE_EXTRACTFROMPDB } from 'nf-core/tcoffee/extractfrompdb'
License
MIT License
Process
Name
|
TCOFFEE_EXTRACTFROMPDB |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
pdb
file
|
Input pdb to be reformatted |
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
formatted_pdb
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.pdb
file
|
Formatted pdb file *
|
| Tool | Description | Homepage |
|---|---|---|
| tcoffee | A collection of tools for Computing, Evaluating and Manipulating Multiple Alignments of DNA, RNA, Protein Sequences and Structures. | http://www.tcoffee.org/Projects/tcoffee/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:19:03 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftcoffee%2Fextractfrompdb/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/tcoffee/extractfrompdb/blobs/sha256:f66b8dfdad851642be0c596611bfeed90cbc2c247246ad73dfd0315af14ef775 |
| Size | 2.4 KB |
| Checksum | sha256:f66b8dfdad851642be0c596611bfeed90cbc2c247246ad73dfd0315af14ef775 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:19:03 (UTC) | 1 | 2.4 KB | - |