nf-core/taxonkit/lineage @ 0.0.0-0c7146d
Summary
Convert taxonids to taxon lineages
Get started
Add the following snippet to your workflow script to include this module.
include { TAXONKIT_LINEAGE } from 'nf-core/taxonkit/lineage'
License
MIT License
Process
Name
|
TAXONKIT_LINEAGE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
taxid
string
|
Taxon id to look up (provide either this or taxidfile, not both) |
taxidfile
file
|
File with taxon ids to look up, each on their own line (provide either this or name, not both; the file can contain other information, see the tool's docs) |
taxdb
file
|
Taxonomy database unpacked from ftp://ftp.ncbi.nih.gov/pub/taxonomy/taxdump.tar.gz |
|---|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tsv
file
|
TSV file with added taxon lineages *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| taxonkit | A Cross-platform and Efficient NCBI Taxonomy Toolkit | https://bioinf.shenwei.me/taxonkit/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:18:46 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Ftaxonkit%2Flineage/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/taxonkit/lineage/blobs/sha256:c59f3c6954cfcc7625965246463c1a776208f6fab00aec9469e811bb7d5cb898 |
| Size | 2.6 KB |
| Checksum | sha256:c59f3c6954cfcc7625965246463c1a776208f6fab00aec9469e811bb7d5cb898 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:18:46 (UTC) | 1 | 2.6 KB | - |