Nextflow Registry | nf-core/sylphtax/merge@0.0.0-0c7146d

nf-core/sylphtax/merge @ 0.0.0-0c7146d

Merge multiple taxonomic profiles from sylphtaxt/taxprof into a tsv table

sylph metagenomics merge

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @sofstam

Maintainers: @sofstam

Merge multiple taxonomic profiles from sylphtaxt/taxprof into a tsv table

Add the following snippet to your workflow script to include this module.

include { SYLPHTAX_MERGE } from 'nf-core/sylphtax/merge'

MIT License

Process

`Name`	`SYLPHTAX_MERGE`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`sylphtax_reports` file	Output taxonomic profile from sylph-tax taxprof command. `*.{sylphmpa}`

`data_type` string	Can be ANI, relative abundance, or sequence abundance.

Output 2 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.tsv` file	Output profile with the merged taxonomic profiles in tsv format. `*.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
sylphtax	Integrating taxonomic information into the sylph metagenome profiler.	https://github.com/bluenote-1577/sylph-tax?tab=readme-ov-file

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:18:26 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsylphtax%2Fmerge/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sylphtax/merge/blobs/sha256:e6082601094465ce0424f54c032372fe8a5a1fbd48c56d1482b2e7ab9ae4fbdf
Size	2.5 KB
Checksum	sha256:e6082601094465ce0424f54c032372fe8a5a1fbd48c56d1482b2e7ab9ae4fbdf
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:18:26 (UTC)		1	2.5 KB	-