nf-core/svync @ 0.0.0-0c7146d
Summary
A tool to standardize VCF files from structural variant callers
Get started
Add the following snippet to your workflow script to include this module.
include { SVYNC } from 'nf-core/svync'
License
MIT License
Process
Name
|
SVYNC |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
The input VCF file containing structural variants *.{vcf,vcf.gz}
|
tbi
file
|
The index of the input VCF file containing structural variants *.tbi
|
config
file
|
The config stating how the standardization should happen *.{yml,yaml}
|
Output
3 channels
#1
tbi
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.tbi
file
|
The index of the standardized VCF file *.tbi
|
#2
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.vcf.gz
file
|
The standardized VCF file *.vcf.gz
|
#3
versions_svync
tuple
${task.process}
string
|
The name of the process |
|---|---|
svync
string
|
The name of the tool |
svync --version | sed 's/svync version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| svync | A tool to standardize VCF files from structural variant callers | https://github.com/nvnieuwk/svync |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:17:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsvync/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/svync/blobs/sha256:3e4bed4db4e3de6a1d33f1f97c97027f7dcc3590174f6448941854ca0dd10f4e |
| Size | 2.8 KB |
| Checksum | sha256:3e4bed4db4e3de6a1d33f1f97c97027f7dcc3590174f6448941854ca0dd10f4e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:17:49 (UTC) | 1 | 2.8 KB | - |