Nextflow Registry | nf-core/svtools/vcftobedpe@0.0.0-0c7146d

nf-core/svtools/vcftobedpe @ 0.0.0-0c7146d

Convert a VCF file to a BEDPE file.

structural bedpe vcf conversion variants

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @nvnieuwk

Maintainers: @nvnieuwk

Convert a VCF file to a BEDPE file.

Add the following snippet to your workflow script to include this module.

include { SVTOOLS_VCFTOBEDPE } from 'nf-core/svtools/vcftobedpe'

MIT License

Process

`Name`	`SVTOOLS_VCFTOBEDPE`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`vcf` file	Input VCF file containing structural variants `*.{vcf,vcf.gz}`

Output 2 channels

#1 bedpe tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.bedpe` file	The converted BEDPE file `*.bedpe`

#2 versions_svtools tuple

`${task.process}` string	The name of the process
`svtools` string	The name of the tool
`svtools --version \|& sed 's/svtools //'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
svtools	Tools for processing and analyzing structural variants	n/a

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:17:44 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsvtools%2Fvcftobedpe/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/svtools/vcftobedpe/blobs/sha256:9e9b94e034b90d1f49ac51692ae5e80e6d112f49c1238c182ea48e33a618a2e6
Size	2.1 KB
Checksum	sha256:9e9b94e034b90d1f49ac51692ae5e80e6d112f49c1238c182ea48e33a618a2e6
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:17:44 (UTC)		1	2.1 KB	-