nf-core/survivor/bedpetovcf @ 0.0.0-0c7146d
Summary
Converts a bedpe file to a VCF file (beta version)
Get started
Add the following snippet to your workflow script to include this module.
include { SURVIVOR_BEDPETOVCF } from 'nf-core/survivor/bedpetovcf'
License
MIT License
Process
Name
|
SURVIVOR_BEDPETOVCF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bedpe
file
|
BEDPE file |
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf
file
|
Output VCF file *.{vcf}
|
#2
versions_survivor
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
survivor
string
|
The name of the tool |
SURVIVOR 2>&1 | grep 'Version' | sed 's/Version: //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| survivor | Toolset for SV simulation, comparison and filtering | https://github.com/fritzsedlazeck/SURVIVOR/wiki |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:17:13 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsurvivor%2Fbedpetovcf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/survivor/bedpetovcf/blobs/sha256:fc6b16cf43037127ccb0367e237a15a8108c0f7fd51ffb2c5d6539722948e5fd |
| Size | 2.1 KB |
| Checksum | sha256:fc6b16cf43037127ccb0367e237a15a8108c0f7fd51ffb2c5d6539722948e5fd |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:17:13 (UTC) | 1 | 2.1 KB | - |