nf-core/stranger @ 0.0.0-0c7146d
Summary
Annotates output files from ExpansionHunter with the pathologic implications of the repeat sizes.
Get started
Add the following snippet to your workflow script to include this module.
include { STRANGER } from 'nf-core/stranger'
License
MIT License
Process
Name
|
STRANGER |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF with repeat expansions *.{vcf.gz,vcf}
|
#2
tuple
meta2
map
|
Groovy Map containing reference information e.g. [ id:'test' ] |
|---|---|
variant_catalog
file
|
json file with repeat expansion sites to genotype *.{json}
|
Output
4 channels
#1
tbi
tuple
meta
map
|
Annotated VCF file *.{vcf.gz}
|
|---|---|
*.vcf.gz.tbi
map
|
Index of the annotated VCF file *.{vcf.gz.tbi}
|
#2
vcf
tuple
meta
map
|
Annotated VCF file *.{vcf.gz}
|
|---|---|
*.vcf.gz
map
|
Annotated VCF file *.{vcf.gz}
|
#3
versions_tabix
tuple
${task.process}
string
|
The name of the process |
|---|---|
tabix
string
|
The tool name |
tabix -h 2>&1 | grep -oP 'Version:\s*\K[^\s]+'
eval
|
The expression to obtain the version of the tool |
#4
versions_stranger
tuple
${task.process}
string
|
The name of the process |
|---|---|
stranger
string
|
The name of the tool |
stranger --version | sed 's/stranger, version //g'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| stranger | Annotate VCF files with str variants | https://github.com/moonso/stranger |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:16:52 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fstranger/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/stranger/blobs/sha256:ea34c4f4483f72d308eaa906b5dba720ec5685c0a17477728d187ab815ff6774 |
| Size | 2.9 KB |
| Checksum | sha256:ea34c4f4483f72d308eaa906b5dba720ec5685c0a17477728d187ab815ff6774 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:16:52 (UTC) | 1 | 2.9 KB | - |