Nextflow Registry | nf-core/spotiflow@0.0.0-0c7146d

nf-core/spotiflow @ 0.0.0-0c7146d

Spotiflow, accurate and efficient spot detection with stereographic flow.

imaging image microscopy transcriptomics spatial spot detection

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @migueLib

Maintainers: @migueLib

Spotiflow, accurate and efficient spot detection with stereographic flow.

Add the following snippet to your workflow script to include this module.

include { SPOTIFLOW } from 'nf-core/spotiflow'

MIT License

Process

`Name`	`SPOTIFLOW`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`image_2d` file	2D TIF Image file with the spots to be detected `*.{tif,tiff,png,jpg,jpeg}`

Output 2 channels

#1 spots tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.csv` file	CSV file with the X, Y positions of the detected spots. `*.{csv}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
spotiflow	Spotiflow allows for accurate and efficient spot detection with stereographic flow	https://weigertlab.github.io/spotiflow/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:16:09 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fspotiflow/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/spotiflow/blobs/sha256:f73e6e1302ec2b59acb2f8600caf68e9f093b65df7545c7adb3e43f84a734658
Size	2.3 KB
Checksum	sha256:f73e6e1302ec2b59acb2f8600caf68e9f093b65df7545c7adb3e43f84a734658
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:16:09 (UTC)		1	2.3 KB	-