nf-core/sourmash/taxannotate @ 0.0.0-0c7146d
Summary
Annotate list of metagenome members (based on sourmash signature matches) with taxonomic information.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_TAXANNOTATE } from 'nf-core/sourmash/taxannotate'
License
MIT License
Name
|
SOURMASH_TAXANNOTATE |
|---|
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gather_results
file
|
Mandatory table with signatures classified as belonging to any of the genomes in the sourmash database(s), result of |
taxonomy
file
|
One or more databases with lineages (in CSV format, Mandatory) |
|---|
result
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.with-lineages.csv.gz
file
|
Table with signatures classified as belonging to any of the genomes in the sourmash database(s) with an additional 'lineage' column containing the taxonomic information for each database match. *{csv.gz}
|
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:55 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Ftaxannotate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourmash/taxannotate/blobs/sha256:9e02526dcbce7b42135d9588ee25f8a9d45dda4867502dd809328a95002d357c |
| Size | 2.9 KB |
| Checksum | sha256:9e02526dcbce7b42135d9588ee25f8a9d45dda4867502dd809328a95002d357c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:55 (UTC) | 1 | 2.9 KB | - |