nf-core/sourmash/index @ 0.0.0-0c7146d
Summary
Create a database of sourmash signatures (a group of FracMinHash sketches) to be used as references.
Get started
Add the following snippet to your workflow script to include this module.
include { SOURMASH_INDEX } from 'nf-core/sourmash/index'
License
MIT License
Process
Name
|
SOURMASH_INDEX |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
signatures
file
|
Files containing signature (hash sketches) of reference genomes *.{sig}
|
ksize
integer
|
ksize value |
|---|
Output
2 channels
#1
signature_index
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sbt.zip
file
|
Database of signatures *.{sbt.zip}
|
#2
versions_sourmash
tuple
${task.process}
string
|
The name of the process |
|---|---|
sourmash
string
|
The name of the tool |
sourmash --version 2>&1 | sed 's/^sourmash //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| sourmash | Compute and compare FracMinHash signatures for DNA data sets. | https://sourmash.readthedocs.io/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsourmash%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sourmash/index/blobs/sha256:6feab8efce95951da099916b8cd53ba1cf433a45e5de2c237b72f91dc05e79f1 |
| Size | 2.3 KB |
| Checksum | sha256:6feab8efce95951da099916b8cd53ba1cf433a45e5de2c237b72f91dc05e79f1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:51 (UTC) | 1 | 2.3 KB | - |