nf-core/snpdists @ 0.0.0-0c7146d
Summary
Pairwise SNP distance matrix from a FASTA sequence alignment
Get started
Add the following snippet to your workflow script to include this module.
include { SNPDISTS } from 'nf-core/snpdists'
License
MIT License
Process
Name
|
SNPDISTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
alignment
file
|
The input FASTA sequence alignment file *.{fasta,fasta.gz}
|
Output
2 channels
#1
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.tsv
file
|
The output TSV file containing SNP distance matrix *.tsv
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| snpdists | Convert a FASTA alignment to SNP distance matrix | https://github.com/tseemann/snp-dists |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsnpdists/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/snpdists/blobs/sha256:922164655f4591b4eba0cb4d1924042aef6de8a640f7a4d2b13989fcb1ac66b0 |
| Size | 2.0 KB |
| Checksum | sha256:922164655f4591b4eba0cb4d1924042aef6de8a640f7a4d2b13989fcb1ac66b0 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:21 (UTC) | 1 | 2.0 KB | - |