nf-core/smoothxg @ 0.0.0-0c7146d
Summary
Linearize and simplify variation graph in GFA format using blocked partial order alignment
Get started
Add the following snippet to your workflow script to include this module.
include { SMOOTHXG } from 'nf-core/smoothxg'
License
MIT License
Process
Name
|
SMOOTHXG |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
gfa
file
|
Variation graph in GFA 1.0 format *.{gfa}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*smoothxg.gfa
file
|
Linearized and simplified graph in GFA 1.0 format *.smoothxg.{gfa}
|
#2
maf
*.maf
file
|
write the multiple sequence alignments (MSAs) in MAF format in this file (optional) *.{maf}
|
|---|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| smoothxg | smoothxg linearizes and simplifies variation graphs using blocked partial order alignment. | https://github.com/pangenome/smoothxg |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsmoothxg/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/smoothxg/blobs/sha256:0488080c2b688b625d250cc93476996cc1ea4d5052e225251a801ed46ed31816 |
| Size | 2.4 KB |
| Checksum | sha256:0488080c2b688b625d250cc93476996cc1ea4d5052e225251a801ed46ed31816 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:06 (UTC) | 1 | 2.4 KB | - |