nf-core/sigprofiler @ 0.0.0-0c7146d
Summary
mutational signature deconvolution of cancer cells
Get started
Add the following snippet to your workflow script to include this module.
include { SIGPROFILER } from 'nf-core/sigprofiler'
License
MIT License
Process
Name
|
SIGPROFILER |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
tsv_list
file
|
joint tsv file with validated mutations by CNAqc *.{tsv}
|
genome
string
|
Reference genome name to use with SigProfiler (e.g. "GRCh37", "GRCh38") |
|---|
genome_installed_path
file
|
path to installed reference genome (optional) |
|---|
Output
2 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
results_sigprofiler
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
results/*
directory
|
folder with saved output results results/*
|
| Tool | Description | Homepage |
|---|---|---|
| sigprofilermatrixgenerator | Sigprofilermatrixgenerator is a Python-based tool. It creates mutational matrices for all types of somatic mutations (SBS, DBS, and IDs) | n/a |
| sigprofilerextractor | SigProfilerExtractor is a Python-based tool. It allows de novo extraction of mutational signatures from data generated in a matrix format, identification of the number of operative mutational signatures, and their activities in each sample. | n/a |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:14:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsigprofiler/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sigprofiler/blobs/sha256:3b3620ca5d4fdd7f4d6a46b2fb7eae9ca392682f94ce2234353847a10a407c2e |
| Size | 6.4 KB |
| Checksum | sha256:3b3620ca5d4fdd7f4d6a46b2fb7eae9ca392682f94ce2234353847a10a407c2e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:14:06 (UTC) | 1 | 6.4 KB | - |